1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacatagtgaattaattcatgcgctgtacttttttttatacttcttgaagagcatttctagctcactctatggtatctgttgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA
species | Zea mays |
transcript | GRMZM2G078033_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGCGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|67021466|gb|CO450215.1|CO450215
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACTGGCAEST: gi|149011847|gb|EE042454.2|EE042454
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|31364427|gb|CD448782.1|CD448782
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|31359211|gb|CD443568.1|CD443568
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGCTGGAGAAACATTCCAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACCACATGCCCCTGCTACAGGCAEST: gi|67012438|gb|CO441187.1|CO441187
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAEST: gi|148966079|gb|EE017018.2|EE017018
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
EST: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG ACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
genomic: AGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAGgtacatagtg ... tgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCA
ttatacttcttgaagagcatttctagctcactctatggtatctgttgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA
agctcac putative branch site (score: 3)
atttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatagtgaattaattcatgcgctgtacttttttttatacttcttgaagagcatttctagctcactctatggtatctgttgcatcacagACGGTGAAAGTGCGCGATGAGCAGGAACACGACATGCCACTGCTACAGGCAATTTCTATTGTGTTTGAGAGGCACCCCCATCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG