Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAGGTTCGCCCAGGAGGTGGAGAAGCTGTCGGACAAGGAAGCCGTCGGCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactcatctactttgagctagtaagcatgaaggttgtccatgtggctgacgcgtttgcatttggtgtggtatgttgcag

Basic information

species Zea mays
transcript GRMZM2G078033_T04
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91867904|gb|EB399845.1|EB399845
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|93283775|gb|EB676039.1|EB676039
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCGGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|31355509|gb|CD439866.1|CD439866
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|67019141|gb|CO447890.1|CO447890
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|88746791|gb|DY530932.1|DY530932
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGGTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|76937547|gb|DV175182.1|DV175182
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTG
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTG
EST: gi|31360223|gb|CD444580.1|CD444580
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGG
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGG
EST: gi|33942630|gb|CF349230.1|CF349230
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCC-AACTCC-TGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|60344434|gb|DN211407.1|DN211407
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|67010776|gb|CO439525.1|CO439525
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|91867906|gb|EB399846.1|EB399846
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|67011851|gb|CO440600.1|CO440600
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGA-GCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|89250133|gb|DY621919.1|DY621919
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|148981923|gb|EE027990.2|EE027990
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|149011846|gb|EE042453.2|EE042453
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|67029948|gb|CO458697.1|CO458697
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGNGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|31911022|gb|CD651717.1|CD651717
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|89247679|gb|DY619465.1|DY619465
EST:     TGGTCTTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: TGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|31362480|gb|CD446837.1|CD446837
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|148966078|gb|EE017017.2|EE017017
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|76935783|gb|DV174471.1|DV174471
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|211321291|gb|FL273329.1|FL273329
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|78115290|gb|DV533678.1|DV533678
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|78125429|gb|DV543813.1|DV543813
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|91055201|gb|EB165619.1|EB165619
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGTTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|78115289|gb|DV533677.1|DV533677
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|31998320|gb|CD662029.1|CD662029
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|149097082|gb|EE182889.2|EE182889
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|71758402|gb|DR956339.1|DR956339
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|88747078|gb|DY531219.1|DY531219
EST:     GCCTGGTCGTTTCTCTCCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|71430456|gb|DR811506.1|DR811506
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|5398764|gb|AI812229.1|AI812229
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|76935789|gb|DV174472.1|DV174472
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|148969926|gb|EE020831.2|EE020831
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|50337354|gb|CO532480.1|CO532480
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
EST: gi|110538468|gb|EE042446.1|EE042446
EST:     GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCG                         ACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC
genomic: GCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactca ... tatgttgcagACGCAGTACCTGGTGTCGCGATGGGGCTCCGACCCCAACTCCCTGGGGTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGAAGGTTCGCCCAGGAGGTGGAGAAGCTGTCGGACAAGGAAGCCGTCGGCCTGGTCGTTTCTCACCTGAAGAAGATGCTCCCGGATGCCACTGAACCGgtaaaactcatctactttgagctagtaagcatgaaggttgtccatgtggctgacgcgtttgcatttggtgtggtatgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG