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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAGgtattgaaatttcgttttatctctctgtttttatgatgtttacctctctttttgtgttctgtatgttccggatagaaagggggatttgtttttgtcccgatctgtttattatgagctcgtagatattttgttctcacctggttggctggttccgtatgaatctcgtcctgatctcaaataaataaatgaaaaaaatccag

Basic information

species Zea mays
transcript GRMZM2G078033_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32789616|gb|CD941852.1|CD941852
EST:     GATCCCAATGGCCTCAAAACTGGAG                         GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
genomic: GATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
EST: gi|31359211|gb|CD443568.1|CD443568
EST:     GCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG                         GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
genomic: GCCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
EST: gi|32804563|gb|CD956799.1|CD956799
EST:     GATCCCAATGGCCTCAAAACTGGAG                         GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
genomic: GATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
EST: gi|148966079|gb|EE017018.2|EE017018
EST:     CCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAG                         GCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA
genomic: CCGGCGGCTGGTATGGATCCCAATGGCCTCAAAACTGGAGgtattgaaat ... aaaaatccagGCCTTTTGCTCCCGACCATCGAGAGGCGGTGCACGTCGCCTCCATCCGTCA