1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATTTCTCTTTGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgttggcactgtcaattcatttggtcctgtaaattcatcttaccattctgtccatttagcttaatcatgttatctttttcatcatcag
species | Zea mays |
transcript | GRMZM2G077143_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|32907995|gb|CF012808.1|CF012808
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGAGAAAGGCATGATCCATGAATCAATTTCTGCGCATCCACAATTGEST: gi|20208266|gb|BQ134355.1|BQ134355
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTTAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATTCACAATTGEST: gi|22542052|gb|BU092490.1|BU092490
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|78544708|gb|DV622206.1|DV622206
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|78080406|gb|DV508818.1|DV508818
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|211526826|gb|FL147640.1|FL147640
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCYTGGAGACCTTTATATTAAAT GTGAGTGGGAAAGGCEST: gi|211526825|gb|FL147639.1|FL147639
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGC
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|148972535|gb|EE023494.2|EE023494
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|6270006|gb|AW157977.1|AW157977
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCGCATCCACAATTGEST: gi|60349354|gb|DN216327.1|DN216327
genomic: TTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: GAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|87156355|gb|DY401144.1|DY401144
genomic: GAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|76910375|gb|DV163831.1|DV163831
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|76910376|gb|DV163832.1|DV163832
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|61119534|gb|DN560495.1|DN560495
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGAGAAAGGCATGATCCATGAATCAATTTCTGCGCATCCACAATTGEST: gi|211526827|gb|FL147641.1|FL147641
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|26456272|gb|CA827855.1|CA827855
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTGEST: gi|211529811|gb|FL147642.1|FL147642
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATTTCTCTTTGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgttggcactgtcaattcatttggtcctgtaaattcatcttaccattctgtccatttagcttaatcatgttatctttttcatcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA