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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatacactatttaaagatagaagttgatgatatgaatgggttacatttgtgattatctagtgcataagttatctgagatgcatggcgtgtttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTGACCGTTCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATT

Basic information

species Zea mays
transcript GRMZM2G077143_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26559263|gb|CA831498.1|CA831498
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|22542052|gb|BU092490.1|BU092490
EST:     CTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: CTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|78080406|gb|DV508818.1|DV508818
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|211526826|gb|FL147640.1|FL147640
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|211526825|gb|FL147639.1|FL147639
EST:     ATTCTCTAACCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|148972535|gb|EE023494.2|EE023494
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|87156355|gb|DY401144.1|DY401144
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|76910375|gb|DV163831.1|DV163831
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|76910376|gb|DV163832.1|DV163832
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|61119534|gb|DN560495.1|DN560495
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGCCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|211526827|gb|FL147641.1|FL147641
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG
EST: gi|211529811|gb|FL147642.1|FL147642
EST:     ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG                         GTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTC
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgattatctagtgcataagttatctgagatgcatggcgtgtttttgtgcagGTTGTTGATGCACCAATGCTGCCTACCAAATTCCTCTGTCTTAAGCACCTGACCGTTCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATT
                                          tgttttt  CT-rich tract
                  ataagttat  TA-rich tract