1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaccaaagcattaaattctgattattgcaagcatatgctcactgttactgcacatctaattacttgggattatgataggttacctgaatattacgatttataaacattgatattgtttagtgctatgatttggtcagtcatacatcattattgaattattccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTGCTGCTTGCCTATCTCGTGCCTTTTTACGTTCCTGGAGACGTCATCCTA
species | Zea mays |
transcript | GRMZM2G077143_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|211416109|gb|FL411160.1|FL411160
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|149009516|gb|EE041502.2|EE041502
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|211524698|gb|FL414597.1|FL414597
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|211057369|gb|FL403436.1|FL403436
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|211140286|gb|FL369592.1|FL369592
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|94479484|gb|EB708442.1|EB708442
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|211042506|gb|FL401126.1|FL401126
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTEST: gi|211063940|gb|FL426138.1|FL426138
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
EST: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAG GACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
genomic: ATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCCAGATCTTCCTGAGgtaccaaagc ... ccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGT
tttagtgctatgatttggtcagtcatacatcattattgaattattccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTGCTGCTTGCCTATCTCGTGCCTTTTTACGTTCCTGGAGACGTCATCCTA
ttattcc CT-rich tract
atacatcattattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaaagcattaaattctgattattgcaagcatatgctcactgttactgcacatctaattacttgggattatgataggttacctgaatattacgatttataaacattgatattgtttagtgctatgatttggtcagtcatacatcattattgaattattccaactgcagGACATTTGGTCTCATGTACATTCCCTAATGCCAATGCGTGATGCTGGCCGTGCTGCTTGCCTATCTCGTGCCTTTTTACGTTCCTGGAGACGTCATCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA