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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggggggacggtgttctttcggggctacatgtacagaaccaatctcccctgtttaatttattttgttttggcttccataaccattgtttttgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGATAACCATAATGATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCC

Basic information

species Zea mays
transcript GRMZM2G077143_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240625|gb|DT648539.1|DT648539
EST:     GTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: GTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211416109|gb|FL411160.1|FL411160
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|149009516|gb|EE041502.2|EE041502
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211524698|gb|FL414597.1|FL414597
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211057369|gb|FL403436.1|FL403436
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211140286|gb|FL369592.1|FL369592
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211042506|gb|FL401126.1|FL401126
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: gi|211063940|gb|FL426138.1|FL426138
EST:     CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG                         ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctgtttaatttattttgttttggcttccataaccattgtttttgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGATAACCATAATGATTCTCTAGCCAGCAAAATAATGAGAACTAGAATCCC
                             ccataac  putative branch site (score: 3)
                                      ttgttttt  putative PPT
      tttaatttattttgtt  TA-rich tract