1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTAAATACGGGCACAACTCGTGAACGACGGCGGCGCCTAGCGGTGACATCGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttccttcccagtctccatggctccaccagggcaccagtccatctcgatcttctccccagtctccagtggcccagtcccgttcatctctacaggt...
species | Zea mays |
transcript | GRMZM2G077143_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|211416109|gb|FL411160.1|FL411160
genomic: GTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|149009516|gb|EE041502.2|EE041502
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|211524698|gb|FL414597.1|FL414597
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|211057369|gb|FL403436.1|FL403436
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|211140286|gb|FL369592.1|FL369592
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|211042506|gb|FL401126.1|FL401126
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAGEST: gi|211063940|gb|FL426138.1|FL426138
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
EST: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAG ATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
genomic: CGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttcc ... tgtgtggcagATTAGCTTATTACCACCATGGGTAAAAGAAAGCGGTCGTCATGTCAACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAATACGGGCACAACTCGTGAACGACGGCGGCGCCTAGCGGTGACATCGTCCCCTCGACTCCTCCTCCATCCCCGACGCGGCGGCGCCAGCCTGCAGgtacgtttccttcccagtctccatggctccaccagggcaccagtccatctcgatcttctccccagtctccagtggcccagtcccgttcatctctacaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG