1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtctctttaatatgtttcctctctttcctacttgtggattcatgtctccttttcaatcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGAAGAAGCTCCCATAGATCGTCCCATAGGCAATTCACCAGTGAATTCCAAC
species | Zea mays |
transcript | GRMZM2G074818_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA GACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGAEST: gi|29130575|gb|CB381279.1|CB381279
genomic: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGAgtatgtctct ... tcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGA
EST: CAGCAATCGAGGATGA GACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGAEST: gi|74232287|gb|DT640201.1|DT640201
genomic: CAGCAATCGAGGATGAgtatgtctct ... tcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGA
EST: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA GACGTCCCCTCCATTTCATGATGGTTTTGGAGEST: gi|101384546|gb|EB814318.1|EB814318
genomic: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGAgtatgtctct ... tcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAG
EST: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA GACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGAEST: gi|71444958|gb|DR826008.1|DR826008
genomic: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGAgtatgtctct ... tcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGA
EST: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA GACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGA
genomic: TCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGAgtatgtctct ... tcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGA
atgtttcctctctttcctacttgtggattcatgtctccttttcaatcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGAAGAAGCTCCCATAGATCGTCCCATAGGCAATTCACCAGTGAATTCCAAC
tctccttttcaatc CT-rich tract
ttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctctttaatatgtttcctctctttcctacttgtggattcatgtctccttttcaatcatgttcagGACGTCCCCTCCATTTCATGATGGTTTTGGAGCTAATAACGATCCTAATGAAGAAGCTCCCATAGATCGTCCCATAGGCAATTCACCAGTGAATTCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC