1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGCGGAAGAGCCCGCTGGGCACCGTGTGGATCGCCGCCCACCTCGAGCGCAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggctccgccctcgcttgcccaaaggcgcgttttttcttctctctgtcgtccgccggtagaaaaaactggatctttttctcctcccattctttt...
species | Zea mays |
transcript | GRMZM2G074818_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAG AAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATCEST: gi|28873763|gb|CB329707.1|CB329707
genomic: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggc ... gcctttccagAAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
EST: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAG AAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATCEST: gi|101390853|gb|EB817362.1|EB817362
genomic: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggc ... gcctttccagAAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
EST: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAG AAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATCEST: gi|74232287|gb|DT640201.1|DT640201
genomic: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggc ... gcctttccagAAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
EST: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAG AAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATCEST: gi|101384546|gb|EB814318.1|EB814318
genomic: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggc ... gcctttccagAAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
EST: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAG AAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATCEST: gi|71444958|gb|DR826008.1|DR826008
genomic: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggc ... gcctttccagAAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
EST: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAG AAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
genomic: CAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggc ... gcctttccagAAAGTATAATGTTCCCTGAAGTTCCAATTGCTCTAAGATTATCAGGGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCGGAAGAGCCCGCTGGGCACCGTGTGGATCGCCGCCCACCTCGAGCGCAAGATCAAGAAGCCGCAGATCGATGGCATCGACATCCCCACCTACGCAGgtccgtcggctccgccctcgcttgcccaaaggcgcgttttttcttctctctgtcgtccgccggtagaaaaaactggatctttttctcctcccattctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctccc