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gtattcatactatcctactgtgttttttctcttcttttttttcttgttcattaatattttacttcactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA
species | Zea mays |
transcript | GRMZM2G074818_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGAATATGTGATGATAGAACTTGATGAG GATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTEST: gi|28873763|gb|CB329707.1|CB329707
genomic: AAGGAGAATATGTGATGATAGAACTTGATGAGgtattcatac ... cactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
EST: AAGGAGAATATGTGATGATAGAACTTGATGAG GATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTEST: gi|101390853|gb|EB817362.1|EB817362
genomic: AAGGAGAATATGTGATGATAGAACTTGATGAGgtattcatac ... cactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
EST: AAGGAGAATATGTGATGATAGAACTTGATGAG GATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACCCATGGGACCTEST: gi|74232287|gb|DT640201.1|DT640201
genomic: AAGGAGAATATGTGATGATAGAACTTGATGAGgtattcatac ... cactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
EST: AAGGAGAATATGTGATGATAGAACTTGATGAG GATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTEST: gi|101384546|gb|EB814318.1|EB814318
genomic: AAGGAGAATATGTGATGATAGAACTTGATGAGgtattcatac ... cactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
EST: AAGGAGAATATGTGATGATAGAACTTGATGAG GATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTEST: gi|71444958|gb|DR826008.1|DR826008
genomic: AAGGAGAATATGTGATGATAGAACTTGATGAGgtattcatac ... cactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
EST: AAGGAGAATATGTGATGATAGAACTTGATGAG GATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
genomic: AAGGAGAATATGTGATGATAGAACTTGATGAGgtattcatac ... cactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCT
gtgttttttctcttcttttttttcttgttcattaatattttacttcactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA
cattaat putative branch site (score: 3)
ttttacttc CT-rich tract
ttcttttttttcttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatactatcctactgtgttttttctcttcttttttttcttgttcattaatattttacttcactgtgcagGATGCCAGAGTAGAGCAATCAGGTCCTGCTCCATCATTACACATGGGACCTACAGCAATCGAGGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG