1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactggccaaaacttctattcacctggttatgacttaccccctcgctggtgttttcaactgtggtgtcggaaacagttcattactgttcctgctaatctagactgaagtctctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACGAGGAGACCATAAGATCGCTCCAGGGGAAGGAAACCGGGCTGCGCGACC
species | Zea mays |
transcript | GRMZM2G069008_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTCCCATCCCCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|15215527|gb|BI431332.1|BI431332
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|148991429|gb|EE032931.2|EE032931
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|45847993|gb|CN071936.1|CN071936
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|149074764|gb|EE163194.2|EE163194
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|6012345|gb|AW061701.1|AW061701
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCNCTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCCCCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|91054278|gb|EB164696.1|EB164696
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|29543762|gb|CB604142.1|CB604142
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|148942502|gb|EC887517.2|EC887517
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCCCCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|91054277|gb|EB164695.1|EB164695
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|29544119|gb|CB604499.1|CB604499
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|31355362|gb|CD439719.1|CD439719
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|149096585|gb|EE182343.2|EE182343
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|78082236|gb|DV510648.1|DV510648
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACEST: gi|113703128|gb|EE680632.1|EE680632
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
EST: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCG GGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACTGGGGCCGCGTTGAC
genomic: TTACGGCACTGCTGGACCCTGCTACTGGAGGTCGAATGCTACCATCACCGgtaactggcc ... tctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGAC
gtcggaaacagttcattactgttcctgctaatctagactgaagtctctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACGAGGAGACCATAAGATCGCTCCAGGGGAAGGAAACCGGGCTGCGCGACC
tgctaat putative branch site (score: 2)
tctctgtt putative PPT
ttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactggccaaaacttctattcacctggttatgacttaccccctcgctggtgttttcaactgtggtgtcggaaacagttcattactgttcctgctaatctagactgaagtctctgttacagGGTGGCTGCGACGAAGAGATTGGCCTGTTCCTGTACAGGGGCCGCGTTGACGAGGAGACCATAAGATCGCTCCAGGGGAAGGAAACCGGGCTGCGCGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA