1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagcgtctgtggtccccttctccggtcccgtctgatggaaagctcgctcacgcgtttgctggctgtgggctctgataagcgcagGAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTCGGAGAAGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTC
species | Zea mays |
transcript | GRMZM2G069008_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCCTGTCCTCGTCGTGGGCGCGCCGGGGCTCCCCSAGGCTGACTTCAG GAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGGAACCTGCAGTEST: gi|91054278|gb|EB164696.1|EB164696
genomic: GCCCCTGTCCTCGTCGTGGGCGCGCCGGGGCTCCCCGAGGCTGACTTCAGgtcagcgtct ... ataagcgcagGAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGG-AACCTGCAGT
EST: GCCCCTGTCCTCGTCGTGGGCGCGCCGGGGCTCCCCGAGGCTGACTTCAG GAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTCEST: gi|211274432|gb|FL232524.1|FL232524
genomic: GCCCCTGTCCTCGTCGTGGGCGCGCCGGGGCTCCCCGAGGCTGACTTCAGgtcagcgtct ... ataagcgcagGAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTC
EST: GCCCCTGTCCTCGTCGTGGGCGCGCCGGGGCTCCCCGAGGCTGACTTCAG GAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTC
genomic: GCCCCTGTCCTCGTCGTGGGCGCGCCGGGGCTCCCCGAGGCTGACTTCAGgtcagcgtct ... ataagcgcagGAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcgtctgtggtccccttctccggtcccgtctgatggaaagctcgctcacgcgtttgctggctgtgggctctgataagcgcagGAACGCGGTGGAGTCGTCGCTGTTCAAGCAGTGGCTGCGGAACCTGCAGTCGGAGAAGGGCGTCCTCACCTACGGGAGGCTGAGCCTCACGCGGGTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA