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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatcttggcttctgaatacgcatgcaccgaaatttgtgttctaatgcaggatagccagcattgtatttatcctgtttttgccagattttggtcca...

Basic information

species Zea mays
transcript GRMZM2G069008_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069008_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g03910.1 (Oryza sativa), 5'ss of exon 4
GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatcttggcttctgaatacgcatgcaccgaaatttgtgtt-ctaatgcaggatagccagcattgtatttatcctgtttttgccagattttggtcca---------------------------------------------------------------------------------------
|||||||||||| ||||||||||  | ||||| || ||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||   | || |   ||   |      ||  | |||| |  |  || ||  |||  |   | | | |  ||| || ||||||||  |||||| ||                                                                                       
GTTAGAGTTCCTGTTGGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGgttagtatccctgtttttctttatcta------gaggtatgtgctgttgttggagattagtaatgctagcactcgtccggtctttgccag--tttggttcacagaccatagtaatactgtatataacattgagtcagaagttcaccatatttgaagtatagtgataaagggtctttcattactgacag

upper sequence: GRMZM2G069008_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 5
GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatcttggcttctgaatacgcatgcaccgaa-atttgtgttctaatgcaggatag--ccagcattgtatttatcctg-tttttgccagattttggtcca----------------------------------------------------------------------------
|  || |||||| |||||| | |  | |||||  |||||||||| ||| | ||||| || ||||||||||||||||| || ||||| ||||||||   | |||      ||     | ||| |||     |||| |||| | || ||     |  |    | || || | |  ||   |||  ||  | |  |||                                                                              
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccct-----ctcatccactacttatttttgttttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtctgacatttttatttgtctttcctagtgatgtaactgttttaaattacataatttttcttgtatttatgactatgatag

upper sequence: GRMZM2G069008_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G04160.1 (Glycine max), 5'ss of exon 5
GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatcttg--gcttctgaa--------------tacgcatgcaccgaa---atttgtgttctaatgcagg---atagccagcattgtatttatcctgtttttgccagattttggtcca------------------------------------------------------------------
|  || |||||| |||||| |  | | |||||  |||||||||| ||| | ||||| || ||||||||||||||||| || ||||| ||||||||   | |||    || ||| |               ||  ||| |  |  |   | |   ||| || || | |   ||           | ||   | ||| | | ||| |||||  |                                                                     
GCAAGGGTTCCTGTTGGAAGAAACATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTGCGTGAGgtctatttctctctgcctctcatcctctccctttttttatacatacctctcacccactctagttgtactggaagtgcatgttttatggccttttccacttgtatgtcccacatttttatttgtctttgctagtgatgtagtagctatcttaaactatacatggtttcttgtatttatgactttgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087423|gb|DV515816.1|DV515816
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|15215527|gb|BI431332.1|BI431332
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|148991429|gb|EE032931.2|EE032931
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|45847993|gb|CN071936.1|CN071936
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|149074764|gb|EE163194.2|EE163194
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|91054278|gb|EB164696.1|EB164696
EST:     GGATGCTAGATGACGAAAAAGGTGACTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|29543762|gb|CB604142.1|CB604142
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|148942502|gb|EC887517.2|EC887517
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|91054277|gb|EB164695.1|EB164695
EST:     GGATGCTAGATGACGAAAAAGGTGACTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|29544119|gb|CB604499.1|CB604499
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|31355362|gb|CD439719.1|CD439719
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGTTTTTTCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|149096585|gb|EE182343.2|EE182343
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|78082236|gb|DV510648.1|DV510648
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
EST: gi|113703128|gb|EE680632.1|EE680632
EST:     GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAG                         GTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT
genomic: GGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatct ... ttgctggcagGTGGAAGAAGAGACTGGTATAAAGCTGAATATAGAAGACATGGTTGATCTT