1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aggcaactcgccctcaagaaaaggctgccaatatctctcaacatattgtggcgaatggtaatgcattttactctcttgacttatcattttcattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATGGCCAACTACG
species | Zea mays |
transcript | GRMZM2G065839_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG TTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATGEST: gi|67021225|gb|CO449974.1|CO449974
genomic: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAGgtgccttacc ... cattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATG
EST: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG TTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATGEST: gi|74233385|gb|DT641299.1|DT641299
genomic: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAGgtgccttacc ... cattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATG
EST: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG TTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATGEST: gi|71318478|gb|DR796004.1|DR796004
genomic: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAGgtgccttacc ... cattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATG
EST: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG TTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATG
genomic: TGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAGgtgccttacc ... cattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATG
ttgtggcgaatggtaatgcattttactctcttgacttatcattttcattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATGGCCAACTACG
tcttgac putative branch site (score: 60)
ttttcattct putative PPT
ttatcattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcaactcgccctcaagaaaaggctgccaatatctctcaacatattgtggcgaatggtaatgcattttactctcttgacttatcattttcattctacagTTCCGGGAAGCTGCAATGTCCAAGGATGATACGGAATTGCTAAGGGTCATGGCCAACTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - -aagaaaa
- - - - - - - - - - - ggctgcc
- - - - - - - - - - - - - - - - - - - caacata