1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttatatccttgttacagttcatttaccagtgcaatagatgttttttttaatttcaattttttctgtaatttattgtcatctcatctgaatcgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG
species | Zea mays |
transcript | GRMZM2G065839_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGTGAGGTGATTGGGCCAGGNNNNNNNAGATTCAAGGCTGAAATTG ATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTGEST: gi|67021225|gb|CO449974.1|CO449974
genomic: CAAAAGTGAGGTGATTGGGCCAGGTTTTTTTAGATTCAAGGCTGAAATTGgtatattctt ... cgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTG
EST: CAAAAGTGAGGTGATTGGGCCAGGNNNNNNNAGATTCAAGGCTGAAATTG ATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTGEST: gi|74233385|gb|DT641299.1|DT641299
genomic: CAAAAGTGAGGTGATTGGGCCAGGTTTTTTTAGATTCAAGGCTGAAATTGgtatattctt ... cgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTG
EST: CAAAAGTGAGGTGATTGGGCCAGGNNNNNNNAGATTCAAGGCTGAAATTG ATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTGEST: gi|71318478|gb|DR796004.1|DR796004
genomic: CAAAAGTGAGGTGATTGGGCCAGGTTTTTTTAGATTCAAGGCTGAAATTGgtatattctt ... cgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTG
EST: CAAAAGTGAGGTGATTGGGCCAGGNNNNNNNAGATTCAAGGCTGAAATTG ATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTG
genomic: CAAAAGTGAGGTGATTGGGCCAGGTTTTTTTAGATTCAAGGCTGAAATTGgtatattctt ... cgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTG
tttaatttcaattttttctgtaatttattgtcatctcatctgaatcgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG
ttttaat putative branch site (score: 72)
tcgtctt putative PPT
tttcaattttttctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatatccttgttacagttcatttaccagtgcaatagatgttttttttaatttcaattttttctgtaatttattgtcatctcatctgaatcgtcttacagATTTCAATGGAGTTGTTCTGGTACAAAATTATTTGGAAAGGACTGGACGTGGGAGTTGGGCAAAACAG
- - - - - - - - -ttcattt
- - - - - - - - - - - - -ccagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaat