1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAGgtctcaaactctcaaataattaatcaaacaacaacagagacagacagacaaattgatgaaatgaactaattaattaatgaactgaatctatatccaacatgatatacatag
species | Zea mays |
transcript | GRMZM2G059083_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAG TACTAT-GGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTEST: gi|13315987|gb|BG410434.1|BG410434
genomic: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAGgtctcaaact ... atatacatagTAC-ACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCT
EST: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAG TACACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTGEST: gi|13315986|gb|BG410433.1|BG410433
genomic: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAGgtctcaaact ... atatacatagTACACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTG
EST: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAG TACACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTGEST: gi|13126400|gb|BG316970.1|BG316970
genomic: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAGgtctcaaact ... atatacatagTACACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTG
EST: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAG TACACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTG
genomic: TCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAGgtctcaaact ... atatacatagTACACCGGGCTGGCGTGGCTGTTCCTGGGCGTCCCGACCAGCGACACCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCAACGGGTACCGGCATCGCTCCGTTCCGCTCCTTCTTGTGGAAGATGTTCTTCGAGGAGCACGAGGACTACAAGgtctcaaactctcaaataattaatcaaacaacaacagagacagacagacaaattgatgaaatgaactaattaattaatgaactgaatctatatccaacatgatatacatag
- - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA