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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCCAAGGAGCCGTACGTCGGGAGGTGCCTGCTCAACACCAGGATCACCGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagcttacctaattagtagcagtaatctagtgttagttaggataaggtaaggtgatgtattgggtggtcgtgcatgcag

Basic information

species Zea mays
transcript GRMZM2G059083_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78085945|gb|DV514338.1|DV514338
EST:     CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|89253046|gb|DY624832.1|DY624832
EST:     CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|605756|gb|T27568.1|T27568
EST:     CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATG-CG
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|76015965|gb|DT943135.1|DT943135
EST:     CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|13490690|gb|BG517454.1|BG517454
EST:     CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|13557961|gb|BG549317.1|BG549317
EST:     CACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: CACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|13382263|gb|BG458938.1|BG458938
EST:     CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|13126400|gb|BG316970.1|BG316970
EST:     TGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: TGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: gi|50328327|gb|CO523453.1|CO523453
EST:     GGCGACCAAGCGCCCGGGGAGACATGGCACATGGTCTTCAGCACAGAAG                         GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: GGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG