1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagttgtctagctttaatttccgccatgtctcagttcttccatgcagactaatatattatatactaagcatatatatacatactaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG
species | Zea mays |
transcript | GRMZM2G059083_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT GTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|89253046|gb|DY624832.1|DY624832
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAAATTCCTCT GTGACTTGAAGCCAGGCGCTGAAGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|13315987|gb|BG410434.1|BG410434
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT GTGACTTGAAGCCAGGCGCTGAGGTGTATTATCACAGGGCCAGTGGGCAAGEST: gi|13315986|gb|BG410433.1|BG410433
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTG-AAGATCACAGGGCCAGTGGGCAAG
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT GTGACTTGAAGCCAGGCGCTGAGGTGAAGTTTTTTGGGCCAGTGGGCAAGGEST: gi|76015965|gb|DT943135.1|DT943135
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT GTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|13382263|gb|BG458938.1|BG458938
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT GTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGEST: gi|13126400|gb|BG316970.1|BG316970
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
EST: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT GTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
genomic: CACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCTgtcagttgtc ... actaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGG
cttccatgcagactaatatattatatactaagcatatatatacatactaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG
tactaat putative branch site (score: 1)
taatatattatatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttgtctagctttaatttccgccatgtctcagttcttccatgcagactaatatattatatactaagcatatatatacatactaatgcagGTGACTTGAAGCCAGGCGCTGAGGTGAAGATCACAGGGCCAGTGGGCAAGGAGATGCTCATGCCCAAAGACCCCAACGCAACAATCATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG