1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagccaatgattaatacaaattaattaattaattatatgtatgtatcaccattaagatagctatggcaacttttgttgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT
species | Zea mays |
transcript | GRMZM2G059083_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACG GTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTCEST: gi|89253046|gb|DY624832.1|DY624832
genomic: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACGgtgagccaat ... tgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTC
EST: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACG GTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTCEST: gi|4572774|gb|AI586423.1|AI586423
genomic: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACGgtgagccaat ... tgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTC
EST: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACG GTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTCEST: gi|50328327|gb|CO523453.1|CO523453
genomic: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACGgtgagccaat ... tgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTC
EST: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACG GTGTCGCTGTGCGTGAAGAGGCTGGTCTACACC
genomic: TCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACGgtgagccaat ... tgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACC
attatatgtatgtatcaccattaagatagctatggcaacttttgttgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT
cttttgtt CT-rich tract
attaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccaatgattaatacaaattaattaattaattatatgtatgtatcaccattaagatagctatggcaacttttgttgatgtgcagGTGTCGCTGTGCGTGAAGAGGCTGGTCTACACCAACGATCAGGGGGAGGTCGTCAAAGGAGTCTGCTCGAACTTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG