1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggtagcttacctaattagtagcagtaatctagtgttagttaggataaggtaaggtgatgtattgggtggtcgtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGAGGACAAGAACGGCAAGCCGCACAAGCTCAGGCTCTACTCCATCGCCAG
species | Zea mays |
transcript | GRMZM2G059083_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGACGTGGCACATGGTCTTCAGCACATAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGEST: gi|89253046|gb|DY624832.1|DY624832
genomic: GGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGEST: gi|605756|gb|T27568.1|T27568
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATG-CGEST: gi|4572774|gb|AI586423.1|AI586423
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: GGAGACGTGGCACATGGTCTTCAGCACATAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGEST: gi|13490690|gb|BG517454.1|BG517454
genomic: GGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGEST: gi|13557961|gb|BG549317.1|BG549317
genomic: CGGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: CACATGGTCTTCAGCACAGAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGEST: gi|50328327|gb|CO523453.1|CO523453
genomic: CACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
EST: GGCGACCAAGCGCCCGGGGAGACATGGCACATGGTCTTCAGCACAGAAG GCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
genomic: GGCGACCAAGCGCCCGGGGAGACGTGGCACATGGTCTTCAGCACAGAAGgtaggtagct ... gtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCG
atctagtgttagttaggataaggtaaggtgatgtattgggtggtcgtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGAGGACAAGAACGGCAAGCCGCACAAGCTCAGGCTCTACTCCATCGCCAG
ttagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtagcttacctaattagtagcagtaatctagtgttagttaggataaggtaaggtgatgtattgggtggtcgtgcatgcagGCGAGGTCCCCTACAGAGAGGGCCAGTCCATCGGCGTCATCGCGGATGGCGAGGACAAGAACGGCAAGCCGCACAAGCTCAGGCTCTACTCCATCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
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