1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...accagaataattcaatcttactctgtattggttttcaattgttcttgtcattgcatatgcagcgttatctccaaatattgacttcaaaattgtacttcagATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTGGCACCCTTGGTCAGCATCTTGAAGATATCATCACTGATATTTCAGAATT
species | Zea mays |
transcript | GRMZM2G056849_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCGCCAGAACCCCAAGACCAAGAGCTTCCTACCGTCGCCCTCCTTCT ATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTGEST: gi|211305796|gb|FK975909.1|FK975909
genomic: GCCGCGCCAGAACCCCAAGACCAAGAGCTTCCTACCGTCGCCCTCCTTCTgtaagctccc ... tgtacttcagATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTG
EST: GCCGCGCCAGAACCCCAAGACCAAGAGCTTCCTACCGTCGCCCTCCTTCT ATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTG
genomic: GCCGCGCCAGAACCCCAAGACCAAGAGCTTCCTACCGTCGCCCTCCTTCTgtaagctccc ... tgtacttcagATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTG
tgtcattgcatatgcagcgttatctccaaatattgacttcaaaattgtacttcagATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTGGCACCCTTGGTCAGCATCTTGAAGATATCATCACTGATATTTCAGAATT
tattgac putative branch site (score: 27)
aaatattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accagaataattcaatcttactctgtattggttttcaattgttcttgtcattgcatatgcagcgttatctccaaatattgacttcaaaattgtacttcagATTCTTCCTCGAAGAAAGGTAAACCTCAGAAATTGGTCAGCTTGTGCCTTGGCACCCTTGGTCAGCATCTTGAAGATATCATCACTGATATTTCAGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- cagaataa
- - - - - - - - - - - -tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - -attgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcagc