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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatacatatactaatctaatatgaacatttcgcatggatcgtcgtgctctaattgacacaggtaggcggtagcagctagcagtacccataacttgcatgtcttctgctagGCCACCTACGACGAGTTGGCGCGTATCCTGTTGCCACGAACCGGCGGCCCCATCGTGTACTACACCGCGGACGCGGAGCCAGAGAGCGGTGCCGCCGAAG

Basic information

species Zea mays
transcript GRMZM2G054916_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759251|gb|DY688123.1|DY688123
EST:     CGTCGGTCATTGCCGGTTTTGGGCCGAAGACGCTTACCCGTGCCTTCAAC                         GCCACCTACGACGAGTTGGCGCGTATCCTGTTGCCACGAACCGGCGGCCCC
genomic: CGTCGGTCATTGCCGGTTTTGGGCCGAAGACGCTTACCCGTGCCTTCAACgtgagataca ... cttctgctagGCCACCTACGACGAGTTGGCGCGTATCCTGTTGCCACGAACCGGCGGCCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacaggtaggcggtagcagctagcagtacccataacttgcatgtcttctgctagGCCACCTACGACGAGTTGGCGCGTATCCTGTTGCCACGAACCGGCGGCCCCATCGTGTACTACACCGCGGACGCGGAGCCAGAGAGCGGTGCCGCCGAAG
                              ccataac  putative branch site (score: 3)
                                            tcttctgct  putative PPT
                                ataactt  TA-rich tract