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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCACCTTCTACATGGTCAACCCCGGCAAAGGCCAGAGGCTGCAGATCATATGCAGCGTGGACGCCTCCGATAGCCTTGGCTTTGGACCTCCTTATCAGgtctcgccccctcctcttcctttttgcactctcgtcgtcttcctgttcttgttgcttgcaggcaagagaacatatagtatagtacatgcaatccgcgattcccagcactgatgaaccatgatccaacaaatccaatacag

Basic information

species Zea mays
transcript GRMZM2G054916_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054916_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g21790.1 (Oryza sativa), 5'ss of exon 2
---CTCCACCTTCTACATGGTCAACCCCGGCAAAGGCCAGAGGCTGCAGATCATATGCAGCGTGGACGCCTCCGATAGCCTTGGCTTTGGACCTCCTTATCAGgtctcgccccctcctcttcctttttgcactctcg-tcgtcttcctgttcttgttgcttgcaggcaagagaacatatagtatagtacatgcaatccgcgattcccagcactgatgaaccatgatccaacaaatccaatacag
   ||| || ||||||||||||||| ||||||| |||||||||||| ||||||| |||||| | ||||||||||||| | | ||||| ||    ||||||||||||   || | || |       ||  |||  ||| |||| || ||  || | |    |   |      ||   |  | |  ||                                                          
CGGCTCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATCGACGCCTCCGATAACATCGGCTTCGG---CCCTTATCAGgtcg-accacatcatgccttcgttaacaccatcgatcgttttactcgtcatctccgctaatgaattacgatggtgcaatgcag----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759251|gb|DY688123.1|DY688123
EST:     TATGCAGCGTGGACGCCTCCGATAGCCTTGGCTTTGGACCTCCTTATCAG                         GCCTTCTTCCTCGGCGGCGCAGGGGACCCGGCGTCGGTCATTGCCGGTTTT
genomic: TATGCAGCGTGGACGCCTCCGATAGCCTTGGCTTTGGACCTCCTTATCAGgtctcgcccc ... tccaatacagGCCTTCTTCCTCGGCGGCGCAGGGGACCCGGCGTCGGTCATTGCCGGTTTT