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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGAGGGGCTCATGCACATCGGCTTCATCACCATGGAGCCCAAGACGCTGTTCGTGCCGCAGTACCTCGACTCCAGCATCACTCTCTTCGTGCAGCGGGgtacatgctgttattatttctatctatgcgcgtggcggaggctcgtgtcgttcccggtcgatatgagattgcaatcgcgtggtattgtgatgatgagcag

Basic information

species Zea mays
transcript GRMZM2G054916_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054916_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g21790.1 (Oryza sativa), 5'ss of exon 1
CGCGAGGGGCTCATGCACATCGGCTTCATCACCATGGAGCCCAAGACGCTGTTCGTGCCGCAGTACCTCGACTCCAGCATCACTCTCTTCGTGCAGCGGGgtacatgctgttattatttctatctatgcgcgtggcgga-ggctcgtgtcgttcc--cggtcgatatgagattgcaatcgcgtggtattgtgatgatgagcag
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||  |||||||||||||  ||||||| ||   ||   |   | | || || |  |     |  |||  || ||||    |       | |    | | |  |    |||  |||| |||||||
CGGGAGGGGCTCATGCACATCGGCTTCATCACCATGGAGCCCAAGACGCTGTTCGTGCCGCAGTACGTCGACTCCAACCTCATCCTCTTCGTGCAGCTAGgtacat-ctccgatc--tctcaacaattcgagcagaaatcgagtcgattcattccgctagctcgcgcgtgtgcacgagcttgattgatttggatg-tgagcag