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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGATAAGTAAAAACTGCAACCATTTCTGTGAGGATATCTGCAAAAGGTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttcttgaaacatatgctttctcagccattaatattgctctccaagagttgctgcagagtttgaatatctaaataggcatctgttttttcctca...

Basic information

species Zea mays
transcript GRMZM2G049382_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049382_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G20500.1 (Glycine max), 5'ss of exon 3
CATTTGATAAGTAAAAACTGCAACCATTTCTGTGAGGATATCTGCAAAAGGTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgta---ggagttcttgaaa--catatgctttctcagccattaatattgctctccaagagttgctgcagagtttgaatatctaaataggcatctgttttttcctca
|| |||||    || || ||||||||||||||||||||||| ||  | | | | ||||| |||| ||||||||||||||| ||||| ||||| ||||| ||||   |   || || ||   || || | ||||       | | ||||     |   ||   | | | ||     | ||   | |||   | || || ||||| |
CACTTGATTGTGAAGAATTGCAACCATTTCTGTGAGGATATTTGTTACAAGCTAACAGGCAATTCTATTCCAAAATGGGTCAATCGTCTTGCAAGAATAGgtatatgacatttttaaactccagatccattcttttatgattaaattgtatcactttagagtcggtaaagc----agatggcattagatgt-tggttcttcctga

upper sequence: GRMZM2G049382_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0063g02130.t01 (Vitis vinifera), 5'ss of exon 2
CATTTGATAAGTAAAAACTGCAACCATTTCTGTGAGGATATCTGCAAAAGGTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttcttgaaacatatgctttctcagccattaatattgctctccaagagttgctgcagagtttgaatatctaaataggcatctgt--tttttcctca----
|| ||||| | ||| ||||||||||||||||||||||||||||| || | | |||| || ||    |||||||||||||| |||||||| || ||||| ||||     | ||| |    |    | || | |    |  ||   |  |   ||  |      |||  | ||| | ||| | ||  |  ||  || ||   ||    
CACTTGATTATTAAGAACTGCAACCATTTCTGTGAGGATATCTGTAACAAGCTGACTGGGAACCGAATTCCAAAATGGGTCAATCGACTAGCAAGAATAGgta-----ttttgcacagcacctctactgatctcacaccatctattactttgacattaacttgagcctcaat-tataagttggttttggtgattgttaagcaaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76286586|gb|DV026154.1|DV026154
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|30088173|gb|CB886378.1|CB886378
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|37380498|gb|CF627065.1|CF627065
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|101389925|gb|EB816893.1|EB816893
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|94476135|gb|EB705093.1|EB705093
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|78109676|gb|DV528092.1|DV528092
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG