1 5' 3' | 2 5' 3' | 3 5' 3' |
...taatgttttgagttgtcatatagtggatggatagctttctaacttgtgtaacagcttttgttaatgggagccactgagaggcacaaccttttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGGTCATGACCCAGCTTCTCGAGCTGAAGATAGCGAGAGAAAAATGCTGAC
species | Zea mays |
transcript | GRMZM2G049382_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGEST: gi|30088173|gb|CB886378.1|CB886378
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGEST: gi|37380498|gb|CF627065.1|CF627065
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGEST: gi|101389925|gb|EB816893.1|EB816893
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGEST: gi|94476135|gb|EB705093.1|EB705093
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGEST: gi|78109676|gb|DV528092.1|DV528092
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
gtgtaacagcttttgttaatgggagccactgagaggcacaaccttttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGGTCATGACCCAGCTTCTCGAGCTGAAGATAGCGAGAGAAAAATGCTGAC
tgttaat putative branch site (score: 3)
ccttttat putative PPT
ttttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgttttgagttgtcatatagtggatggatagctttctaacttgtgtaacagcttttgttaatgggagccactgagaggcacaaccttttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCGGTCATGACCCAGCTTCTCGAGCTGAAGATAGCGAGAGAAAAATGCTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -tgttttg
- - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaacc