Sequence
atgc intronic sequence ATGC exonic sequence...actaggtaacattcaaagaaaaggtgttgtatgctctagttctggttacttaaggctgtagattatgacttatggtattctctaccttgtttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGTTTTTGAGGTGGAACCTCGGCAGTGTCCTGGTTTCAAATTTCGGAAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G049382_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA20G01040.1 (Glycine max), 3'ss of exon 2
actaggtaacattcaaagaaaaggtgttgtatgctctagttctggttacttaa-ggctgtagattat---gacttatggtattctctaccttgtttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGTTTTTGAGGTGGAACCTCGGCAGTGTCCTGGTTTCAAATTTCGGAAATC
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---cacttatatctgt-gaatatttattacttttgctgtatttggagaaaagataattctggattccctaaatattttctaaaatggagttattatgccgacagTTTATGGAGTAGAATATGCATTTGGAGCCCATGACTATCCAACAAGTGGTGTCTTTGAGGTTGAGCCTCGACAGTGTCCTGGCTTTAAGTTTAGGAAGTC
upper sequence: GRMZM2G049382_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G20500.1 (Glycine max), 3'ss of exon 2
actaggta-acattcaaagaaaaggtgttgtatgctctagttctggttact-taaggctgtagattatgact-tatggtattctctaccttgtttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGTTTTTGAGGTGGAACCTCGGCAGTGTCCTGGTTTCAAATTTCGGAAATC
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--cacttacatatgtgaatatttattact-tttgctgtatttggagaaaagataattctggattccctgaatattttctaaaatggagttgttatgctgacagTTTATGGAGTAGAATATGCATTTGGAGCCCATGACTATCCAACAAGTGGTGTCTTCGAGGTTGAGCCTCGACAGTGTCCTGGCTTTAAGTTTAGGAAGTC
upper sequence: GRMZM2G049382_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0063g02130.t01 (Vitis vinifera), 3'ss of exon 1
actaggtaacattcaaagaaaa-ggtgttgtatgctctagttctggttacttaaggctgtagattatgacttatggtattctctacct-tgtttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGTTTTTGAGGTGGAACCTCGGCAGTGTCCTGGTTTCAAATTTCGGAAATC
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-gagggcagtttttgattttggcaattttactgtcttttttttttttttttttaatctctatgttggaatagata-tctgatttgcatgtgcatattgacagTTCATGGTGTAGAGTATGCCTTTGGAGCCCATGACTACCCAACAAGTGGTGTTTTTGAGGTTGAACCCCGGCAATGTCCTGGCTTCAAGTTTAGGAAGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacttaaggctgtagattatgacttatggtattctctaccttgtttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGTTTTTGAGGTGGAACCTCGGCAGTGTCCTGGTTTCAAATTTCGGAAATC
tattctctaccttgtt CT-rich tract
tagattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actaggtaacattcaaagaaaaggtgttgtatgctctagttctggttacttaaggctgtagattatgacttatggtattctctaccttgtttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGTTTTTGAGGTGGAACCTCGGCAGTGTCCTGGTTTCAAATTTCGGAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - acattca
- - - - - - - -aagaaaa
- - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - -ttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtag