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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttccatttgattgggagaagtgctgctttcttaaatattatgtgctgccttgagctaacttcctacatttgttccag

Basic information

species Zea mays
transcript GRMZM2G040349_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149028984|gb|EE286170.2|EE286170
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|89762792|gb|DY690244.1|DY690244
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|211340500|gb|FL126029.1|FL126029
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTGT-TGATGCTTATTATAGTGGGGGTTGGGGTCT
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACT-TCTGATGCTTATTATAGTGCGG-TTGGGGTCT
EST: gi|211338112|gb|FL126025.1|FL126025
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGGCGGTTGGGGTCTT
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTG-CGGTTGGGGTCTT
EST: gi|76012499|gb|DT939669.1|DT939669
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|50333900|gb|CO529026.1|CO529026
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|30088407|gb|CB886612.1|CB886612
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|76015258|gb|DT942428.1|DT942428
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|78108019|gb|DV526437.1|DV526437
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|31359967|gb|CD444324.1|CD444324
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTGT-TGATGCTTATTATAGTGGGGTTGGGGTCTT
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACT-TCTGATGCTTATTATAGTGCGGTTGGGGTCTT
EST: gi|211340497|gb|FL126026.1|FL126026
EST:     AGGAAGGCTCTGC-TTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACT
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACT
EST: gi|91057234|gb|EB167652.1|EB167652
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
EST: gi|74233446|gb|DT641360.1|DT641360
EST:     AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTT                         GCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG
genomic: AGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTACAGCCCATCTTTTgtaagttcca ... tttgttccagGCTTGTATTCCTTATACTTCTGATGCTTATTATAGTGCGGTTGGGGTCTTG