1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatcttggcctttgaaacaatgttcccctgtccaagactaatatctaataaggtttattgatacataaccaccatcatgaaagtgtatttttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTA
species | Zea mays |
transcript | GRMZM2G040349_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAEST: gi|211338111|gb|FL126024.1|FL126024
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAA
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATTATCAGGACACAATGAAGCCAGTATEST: gi|149028984|gb|EE286170.2|EE286170
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|89762792|gb|DY690244.1|DY690244
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|211340500|gb|FL126029.1|FL126029
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|211340498|gb|FL126027.1|FL126027
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|211338112|gb|FL126025.1|FL126025
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|76012499|gb|DT939669.1|DT939669
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|50333900|gb|CO529026.1|CO529026
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|30088407|gb|CB886612.1|CB886612
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|76015258|gb|DT942428.1|DT942428
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|211338108|gb|FL126021.1|FL126021
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|78108019|gb|DV526437.1|DV526437
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|116816005|gb|EC858705.1|EC858705
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCACGTGAAAGCAGCCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|31359967|gb|CD444324.1|CD444324
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|211340497|gb|FL126026.1|FL126026
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|211338109|gb|FL126022.1|FL126022
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|91057234|gb|EB167652.1|EB167652
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATEST: gi|74233446|gb|DT641360.1|DT641360
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
EST: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAG ACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
genomic: ATCAGCAGCAAGTGAAAGCAGTCCAAATGAACACACATCAACTCAATCAGgtacttcttt ... ttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTAT
taataaggtttattgatacataaccaccatcatgaaagtgtatttttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTA
acataac putative branch site (score: 3)
tttttgtcttc putative PPT
tttattgatacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcttggcctttgaaacaatgttcccctgtccaagactaatatctaataaggtttattgatacataaccaccatcatgaaagtgtatttttgtcttcagACAATGATGAAGATCATGGGAAAGATAATCAGGACACAATGAAGCCAGTATTGTCCTTGGGGAAGGAAGGCTCTGCCTTTTTGGCCCCAAAATTACATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA