1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAGAAGAATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAGgtatggtcgtggtgttacttttatagccttggattgctcataatctctatttaagaaactccttgtgagtgattcttataataaaataatgctagaggcc...
species | Zea mays |
transcript | GRMZM2G038820_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTATTCATACTANTTTGTGAG GTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACEST: gi|40485893|gb|CK394792.1|CK394792
genomic: ACTTATTCATACTA-TTTGTGAGgtatggtcgt ... tcatgtgcagGTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTAC
EST: ATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAG GTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACCEST: gi|32945628|gb|CF050447.1|CF050447
genomic: ATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAGgtatggtcgt ... tcatgtgcagGTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACC
EST: ATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAG GTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACCEST: gi|84980775|gb|DW531124.1|DW531124
genomic: ATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAGgtatggtcgt ... tcatgtgcagGTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACC
EST: CTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAG GTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACC
genomic: CTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAGgtatggtcgt ... tcatgtgcagGTGATGTTGCAAACTTGCAATACAGGCCTTTGGCAACTAGCTGTTTGTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAGAAGAATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTTGTGAGgtatggtcgtggtgttacttttatagccttggattgctcataatctctatttaagaaactccttgtgagtgattcttataataaaataatgctagaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA