1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccttattgtgccgacataattttccttcacagattatggaaaacatacttatagatgagaggcatttttctaaaagaactattatgatcctttctacagGGGTGCGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAGAAGAATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTT
species | Zea mays |
transcript | GRMZM2G038820_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCAAAAGAAAAATGATGAGCTCACCAAGCATCTGCTGAAGAG GGGTGCGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAGEST: gi|32945628|gb|CF050447.1|CF050447
genomic: GTCCAAAAGAAAAATGATGAGCTCACCAAGCATCTGCTGAAGAGgtaggcttga ... ctttctacagGGGTGCGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAG
EST: CATTGTGTCCAAAAGAAAAATGATGAGCTCACCAAGCATCTGCTGAAGAG GGGTGCGAGAACGACTTTTATTGATGGCGGAGGTCTGACTGCTCTGGAGAG
genomic: CATTGTGTCCAAAAGAAAAATGATGAGCTCACCAAGCATCTGCTGAAGAGgtaggcttga ... ctttctacagGGGTGCGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAG
atacttatagatgagaggcatttttctaaaagaactattatgatcctttctacagGGGTGCGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAGAAGAATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTT
ttctaaa putative branch site (score: 82)
tcctttctac putative PPT
atttttctaaaagaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttattgtgccgacataattttccttcacagattatggaaaacatacttatagatgagaggcatttttctaaaagaactattatgatcctttctacagGGGTGCGAGAACGACAATTAAAGATGGCGGAGGTCTGACTGCTCTGGAGAGAAGAATGGAACTTGGAGCGATAACTGATGAAGACTTATTCATACTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -tgtgccg
- - - - - - - - - - - - -cttcaca
- - - - - - - - - - - - - - - - - - - - -aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa