1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatgttttggagtgcatgcatggagagcaaatgctgctgttttttctttttgtgcaatttctttcttggtattttgttaatttattctatgttcatccagAATGAACGACTCAAATGGAGCTATTCTTTTTATTGAAAAGCCTAAACCTAGTGATGCTTTCTCAATAAAGGAGAGGTACATACAAACGAAG
species | Zea mays |
transcript | GRMZM2G038820_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTACGCTAATTCCATTTGGGAAGCCCTGCTTCCAAAAGAAGATCAAGG AATGAACGACTCAAATGGAGCTATTCTTTTTATTGAAAAGCCTAAACCTAG
genomic: GATTACGCTAATTCCATTTGGGAAGCCCTGCTTCCAAAAGAAGATCAAGGgtatgttaaa ... gttcatccagAATGAACGACTCAAATGGAGCTATTCTTTTTATTGAAAAGCCTAAACCTAG
ctttttgtgcaatttctttcttggtattttgttaatttattctatgttcatccagAATGAACGACTCAAATGGAGCTATTCTTTTTATTGAAAAGCCTAAACCTAGTGATGCTTTCTCAATAAAGGAGAGGTACATACAAACGAAG
tgttaat putative branch site (score: 86)
ttcatcc putative PPT
tattttgttaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttttggagtgcatgcatggagagcaaatgctgctgttttttctttttgtgcaatttctttcttggtattttgttaatttattctatgttcatccagAATGAACGACTCAAATGGAGCTATTCTTTTTATTGAAAAGCCTAAACCTAGTGATGCTTTCTCAATAAAGGAGAGGTACATACAAACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- tgttttg
- - - - - - tgcatgc
- - - - - - - - - - - - gagcaaa
- - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt