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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGCTCTCAAACTTGACAGTTTGGTGGGTGATATAGAAGATGCAGTTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatcttgtcatattgagattcttggaagagtcaacttgacagctgctaatttggcattcttttttcttttccag

Basic information

species Zea mays
transcript GRMZM2G036418_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036418_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g51330.2 (Oryza sativa), 5'ss of exon 3
AAATGGCTCTCAAACTTGACAGTTTGGTGGGTGATATAGAAGATGCAGTTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatcttgtcatattgagattcttggaagagtcaacttgacagctgctaatttggcattcttttttcttttccag
||| ||| || || ||||||||||| || || ||  |||||||||| ||||| |||||||| || ||||||||||||||||||| ||| | |||   |||| | || ||| ||| ||   ||    || | |  |||| || || ||||||| || | |||   |||| || |||||
AAACGGCGCTAAAGCTTGACAGTTTTGTCGGCGACGTAGAAGATGCTGTTTCATCTTCTGTGACCGGAAAACTTAAATCTCGTGCAGAAAGTTCACTGgtacgaatattgccattttagtat----gggaaaaccaacatgtcaactgctaagtttggatttcgtttt-ttctccag

upper sequence: GRMZM2G036418_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g05940.t01 (Vitis vinifera), 5'ss of exon 3
AAATGGCTCTCAAACTTGACAGTTTGGTGGGTGATATAGAAGATGCAGTTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGT------AGACAATTCGGAGgtatggatcttgtcatattgagattcttggaagagtcaacttgacagctgctaatttggcattctttttt---cttttccag------------------
     ||  | ||||||||||||||||| ||||| || |||||||| || |||||| || | |   |||| || ||    | ||       | ||| ||| || ||  | | | | | | ||    ||| |   | || | |  ||   |  |  |  | |   |||||| ||     | | |||                   
----AGCATTAAAACTTGACAGTTTGGTTGGTGACATCGAAGATGCTGTATCTTCTACTATGAACAGAAATCTAAAGAAGCATGCTTCCACACACAGTTCAGAAgtgagcaccct-ttagat---aattttaaaaggaatgatgtttcaaattaatcttgtaaaattcttattagcgttctcccaaatgtctatttcattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71768327|gb|DR966264.1|DR966264
EST:     TTTCTTTTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAG                         GAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATTTTCTA
genomic: TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatct ... tcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
EST: gi|76288801|gb|DV028369.1|DV028369
EST:     TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAG                         GAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
genomic: TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatct ... tcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
EST: gi|71768328|gb|DR966265.1|DR966265
EST:     TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAG                         GAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
genomic: TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatct ... tcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA