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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggatcttgtcatattgagattcttggaagagtcaacttgacagctgctaatttggcattcttttttcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTAGCTTCTGTAGCTGTGACTAGACCACAATGGACTCGCCTTCTATCTTCCG

Basic information

species Zea mays
transcript GRMZM2G036418_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71768327|gb|DR966264.1|DR966264
EST:     TTTCTTTTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAG                         GAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATTTTCTA
genomic: TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatct ... tcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
EST: gi|76288801|gb|DV028369.1|DV028369
EST:     TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAG                         GAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
genomic: TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatct ... tcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
EST: gi|71768328|gb|DR966265.1|DR966265
EST:     TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAG                         GAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA
genomic: TTTCTTCTTCTGTTACTGGAAAACTTAAATCTCGTGTAGACAATTCGGAGgtatggatct ... tcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggaagagtcaacttgacagctgctaatttggcattcttttttcttttccagGAAACACATCATGTTGCTATTGGATATTTGAAAAGCATAGAAGATCTTCTAGCTTCTGTAGCTGTGACTAGACCACAATGGACTCGCCTTCTATCTTCCG
                        tgctaat  putative branch site (score: 2)
                              tttggcattctttttt  CT-rich tract
                                    attcttttttctttt  TA-rich tract