1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acttacgtggttacaaaggcctcattttttatgatgtagtaatattaccttaatgctggcatgtctttcctaaactattagtttcttctttattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCTACATACTCTGATTTGCTTAATAAG
species | Zea mays |
transcript | GRMZM2G030628_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAG GTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCTEST: gi|211468829|gb|FL048938.1|FL048938
genomic: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAGgttctgttga ... tattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCT
EST: AG-AGATT-CTGCCCGACTTATTACACGTTCTGATGACCCATTTGAGAAG GNTAA-TCACGTCTTGATACGTACAAGCAAAAT-CTGAAAGCTATEST: gi|76282827|gb|DV022395.1|DV022395
genomic: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAGgttctgttga ... tattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAA-GCTAT
EST: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAG GTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCTEST: gi|91874212|gb|EB404169.1|EB404169
genomic: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAGgttctgttga ... tattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCT
EST: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAG GGTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCTEST: gi|211184346|gb|FL140052.1|FL140052
genomic: AGGAGATTTCTGCCCGACTTATTACACGTTCTGATGACACATTTGAGAAGgttctgttga ... tattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCT
EST: GACACATTTGACAAG GTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCT
genomic: GACACATTTGAGAAGgttctgttga ... tattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCT
taccttaatgctggcatgtctttcctaaactattagtttcttctttattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCTACATACTCTGATTTGCTTAATAAG
tcctaaa putative branch site (score: 101)
tttcttctttattttg putative PPT
tattagtttcttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttacgtggttacaaaggcctcattttttatgatgtagtaatattaccttaatgctggcatgtctttcctaaactattagtttcttctttattttgcagGTTAAATCACGTCTTGATACGTACAAGCAAAATTCTGAAGCTATTCTTCCTACATACTCTGATTTGCTTAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - -tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgctggc