1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAAAGAGGGTGGCTTCTTGATGGTTACCCAAGGAGCTTCAGTCAAGCACAACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaaaactaactatttatgataagtactatatagtatatacactaacatgtgcttctaatatttagtttgacggtgatatgccggtgtgttcga...
species | Zea mays |
transcript | GRMZM2G030628_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|93014324|gb|EB639844.1|EB639844
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|211468834|gb|FL048943.1|FL048943
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA AEST: gi|211468834|gb|FL048943.1|FL048943
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcag-
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA AEST: gi|211468829|gb|FL048938.1|FL048938
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcag-
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGGATC-EST: gi|211468825|gb|FL048934.1|FL048934
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGG-ATCC
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTNCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|76282827|gb|DV022395.1|DV022395
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|91874212|gb|EB404169.1|EB404169
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|211471359|gb|FL048949.1|FL048949
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|211468827|gb|FL048936.1|FL048936
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|71301850|gb|DR786994.1|DR786994
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCTEST: gi|211468831|gb|FL048940.1|FL048940
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
EST: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAA GTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
genomic: AACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaa ... ttgaattcagGTTCCTGATGATGTTCTAATCGACAGATGTGTTGGAAGACGGCTGGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGAGGGTGGCTTCTTGATGGTTACCCAAGGAGCTTCAGTCAAGCACAACACCTTGAAAATTTGAAAATAAGACCGAATATATTCATTGTGCTAGAAgtaagtcaaaaactaactatttatgataagtactatatagtatatacactaacatgtgcttctaatatttagtttgacggtgatatgccggtgtgttcga
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