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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag...

Basic information

species Zea mays
transcript GRMZM2G030280_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g17260.1 (Oryza sativa), 5'ss of exon 9
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctc-----ccaaaaagaatgctcatcttgcatttcag---------------------------------------------------------
||||   |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| || ||||| || ||||||||||||||||| ||||||  |    | || ||    | |   ||| |    || || | |  |        ||  | || ||         |||   || |||        | |||  ||                                                         
TCTTGGTTCTTCTGGATCAACGGGAAACGTGGCAAACTACATGGGCCAAATGGCAATGGCCATGGGGAAGCTTGGGACCCTTGAGAATTTCCTTCGCCAGgtaccatgttttttctctctct-ctcttttctagtgtaaattatgtatgtaaaccttgggtatagtcttatgatgtccatggagtatgtagtatgcggattcgagtaaactatagttcaaaattgtgtactaaatcctctttatcttttccactatatgaag

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G39050.1 (Glycine max), 5'ss of exon 11
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaa---------agaatgctcatcttgcatttcag------------------------------------------------
 |||   || ||||| ||| |||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||| || || ||||||   ||| ||   ||||||  |    ||||   || ||| | |    | |  | | |  |   ||||   |   | ||  ||  |   ||  |         ||| |  | || |   |  |||                                                 
ACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGGTTCATTAAGCAGgtaa-acttttcttactcacatgta-cgcgatcagtttggttcatttttctcaaagaaaatgctctttcatacagcatttcatggcagattattgatatcaaacatcactattaaaataacttagctctgttcatttttgtggtggtcatttgaaag

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA03G28400.1 (Glycine max), 5'ss of exon 5
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtat--taaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccc----tcccaaaaagaatgctcatcttgcatttcag
 |     || || || ||  | ||||||||||||||  |||||||||||||  | ||||| |||||||| ||||| || ||||||   || ||||  ||||||   | |   ||   || || |   | ||    || |  ||      || ||  |   |  | ||||           ||   | ||    |  |  ||||   
GCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGgtacgctcattttccggtctaattctgttttctcaacttccatct----ttttgaaataaagagaactcaggaagctttgaattaactgagtttaatttatttg--

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA19G31050.2 (Glycine max), 5'ss of exon 9
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctca---tcttgcatttcag-
 |      | || || ||  | |||||||||||||  |||||||| |||||||| ||||| |||||||| ||||| || |||||    || ||||| |||||    || ||| ||| |   |  |  | |||    |  |        | | ||||  |  |   |       |   || | ||| |   |   |    | |  
ACCCAGCACATCAGGCTCCTCGGGAAATGTGGCAAGTTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGATGGGTTTCTTCGCCAGgt----acgctcattttccggtctaattctgttttctcaacttccatctttttgaaataaagagataaagagaactcaggaagcttagaattaagtgagttaaa

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G44270.1 (Glycine max), 5'ss of exon 9
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaa---------agaatgctcatcttgcatttcag---------------------------------------------
 |||   || ||||| ||| |||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||| || || ||||||   ||| ||   |||||||      ||||   || |||  |     | |  | | || |   ||||   |   | ||  ||  |   ||  |         ||| |  | ||     |  |||                                              
ACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGgtat-gcttttcttactcacatgtgtgcg-atcagtttggtacatatttctcaaagaaaatgctctttcatacagcatttcatggcagattattgataacaaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaag

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 11
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtat--taaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag--
 |     || || || ||  | |||||||||||||| |||||||| |||||||| ||||| |||||||| ||||| || ||||||   || ||||  ||||||   | |   ||   || || |   | ||    || |  ||      || ||  |   |  | ||||            | |       ||  ||||     
GCCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcattttccggtctaattctgttttctcaacttccatct----ttttgaaataaagagaactcaggaagctttgaattatctgagtttaatttatatg

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G26280.1 (Glycine max), 5'ss of exon 11
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgaca-tagataaagggttctgtgaatgattgt--actccctcccaaaaagaatgctcatcttgcatttcag--
 | | | || ||||| ||| |||| ||||||||||  ||||||||||||||||||||||| ||||| || || || || || ||    ||| |||  ||||||   |  ||  |||     ||||  | | || || ||| |    |  |  ||||||   ||   ||         |    |    | || |   | |      
ACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAGTTACATGGGTCAAATGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtac--attcttctttgt---tgcacttgtatgccaatagtttgctgcattagtgaataggtgaggacgagtcttttagtccagccttgatttcctaatattatt

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G37220.1 (Glycine max), 5'ss of exon 7
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgta-ttaaccctcttttccaaatgcatctttgtgacat---agataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag
 | | | || ||||| ||| |||| ||||||||||| ||||||||||||||||||||||| ||||| || || || || |||||    ||| |||  |||||| ||    || | || ||  || ||     |    |   | ||    |  |  |||||  |   |  |     |||      ||   |   |   |||    
ACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCAACAGgtacttttttctttgttgcacttgtatacaaatagtttgctacattggtgaataagtgaagaagaatcttttagtccagccttgatttcctaatattatt----

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT5G06950.3 (Arabidopsis thaliana), 5'ss of exon 9
-TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctct----tttccaaatg-catctttgtgaca--tagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag
  || | |  |||  | ||| |||| ||||| |||| |||||||||||| ||||||||||| ||||||||  | || || || ||    ||  | || ||||||  |  | | |    |||  | |||  ||||| || |    || ||| |    ||  |   | | |   |  |             ||                 
GACTCTTGG-TTCAAGTTCATCAGGGAATGTCGCAAGCTACATGGGTCAGATGGCCATGGCAATGGGAAAGTTAGGTACACTCGAAGGATTTATCCGCCAGgtacaacacttgtgatgttttgagatgatatcttagttaagagtatatatatatatcaataggttaataatcgtctcttggttggtggtggcag-------------

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv13s0084g00660.t01 (Vitis vinifera), 5'ss of exon 11
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgaca-tagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag
||||   |||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||||||| || || || ||||||   ||  |||||||||||||    ||    |    ||     ||  ||||| ||   | |   |  ||   || ||| |  ||  |     |   |      |  | | |  |   
TCTTGGCTCTTCTGGTTCATCTGGAAATGTGGCAAACTATATGGGTCAAATGGCCATGGCCATGGGAAAGCTGGGGACTCTTGAGGGGTTTATTCGTCAGgtattccttctaaagttttgattttctttcctgacaataagaataaaatcttgatcat-attatggtctgtttatgatcaaccagaaagttaggaaatgga

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0007g05170.t01 (Vitis vinifera), 5'ss of exon 10
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag------
 | |    | ||||||||| |||| |||||||||||||| ||||| || ||||||||||| ||||| || || || || ||||||   || |||||||||||| |  |||| ||     | || |  |   ||  |   || ||   ||   || || |  | | |     | || || | |  | || ||   |||         
ACCTGGCCCATCTGGATCATCAGGGAATGTGGCAAACTATATGGGCCAGATGGCCATGGCAATGGGTAAGCTAGGGACTCTTGAGGGATTTCTTCGTCAGgtaatctcccttttagtttagtggaagt---tgtaaggaatgaaaacttgaatgcatca--gcagtggtggcaaataaaattatttat-ttattttttgctatcaa

upper sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 8
lower sequence: EFJ18699 (Selaginella moellendorffii), 5'ss of exon 2
TCTTTCGTCTTCTGGATCAACAGGAAATGTGGCAAACTACATGGGTCAAATGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccctcttttccaaatgcatctttgtgacatagataaagggttctgtgaatgattgtactccctcccaaaaagaatgctcatcttgcatttcag
|      |||   |||    |    || || || ||||||||||| |||||||||||||| |||||||| || ||||| || ||||| ||  |||| ||||||        |    |   ||   ||||| |  |   |||||    |||| ||    |                                         
TGCCGGCTCTCTGGGAAACTCCCCCAACGTAGCGAACTACATGGGACAAATGGCCATGGCAATGGGAAAGCTCGGAACTCTCGAGAACTTTGTTCGCCAGgtaacg-----cgagccgcgatctttctttct--cgctgataa----ttctttggcgcag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89106576|gb|DY576793.1|DY576793
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCTTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|89106563|gb|DY576780.1|DY576780
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|71426015|gb|DR807065.1|DR807065
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTTTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|19351176|gb|BM895708.1|BM895708
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|19437057|gb|BM953467.1|BM953467
EST:     TGGCCATGGCTATGGGAAAACTCGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|71305564|gb|DR788925.1|DR788925
EST:     TGGCCATGGCTATGGGAAAACTTGGATCGCTTGAGAATTTCCTTTGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|19437027|gb|BM953437.1|BM953437
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGG
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGG
EST: gi|76290000|gb|DV029568.1|DV029568
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAA-TTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|22490996|gb|BU050919.1|BU050919
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
EST: gi|19351209|gb|BM895741.1|BM895741
EST:     TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAG                         GCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC
genomic: TGGCCATGGCTATGGGAAAACTTGGAACGCTTGAGAATTTCCTTCGTCAGgtattaaccc ... atgtatcaagGCTGACAACCTGCGGCTGCAGACTCTACAACAGATGCAAAGGATCCTGACC