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...ggattgcagaagcaagtggcaaggacccctctaaaatttctgatgtagattgctaatggacattactgtggtattaattggtaatttggctattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG
species | Zea mays |
transcript | GRMZM2G030280_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|89249315|gb|DY621101.1|DY621101
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCACAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAA GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAAACTTTACCCCAA-TAEST: gi|211521271|gb|FL055174.1|FL055174
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAA-CTT-ACCC-AACTA
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|211524264|gb|FL055179.1|FL055179
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGEST: gi|71305566|gb|DR788926.1|DR788926
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|74232819|gb|DT640733.1|DT640733
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|91872807|gb|EB402764.1|EB402764
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|60396273|gb|DN229142.1|DN229142
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|211521265|gb|FL055168.1|FL055168
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTEST: gi|211521270|gb|FL055173.1|FL055173
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTT
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|94472378|gb|EB701336.1|EB701336
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|211521262|gb|FL055165.1|FL055165
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATTTTCAACAGTTGGAGAATAGCAEST: gi|71426016|gb|DR807066.1|DR807066
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCA
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|76290001|gb|DV029569.1|DV029569
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGEST: gi|211524261|gb|FL055176.1|FL055176
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAEST: gi|211521272|gb|FL055175.1|FL055175
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATA
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACEST: gi|211524262|gb|FL055177.1|FL055177
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAAC
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAAEST: gi|101385511|gb|EB814802.1|EB814802
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGA-
EST: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAG GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
genomic: GCCTTGCTCAAAATCGTGAGGCTGCAAGGAAGAGCCGACTAAGGAAGAAGgtatgtgtat ... tattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAG
tagattgctaatggacattactgtggtattaattggtaatttggctattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG
tattaat putative branch site (score: 2)
ctatttt putative PPT
tattaattggtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattgcagaagcaagtggcaaggacccctctaaaatttctgatgtagattgctaatggacattactgtggtattaattggtaatttggctattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT