1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactcctatgtcatgtcgcattttacagccctgtgtcctattgactaaattgaagtttgcttaagatattttctctcacag
species | Zea mays |
transcript | GRMZM2G030280_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|89249315|gb|DY621101.1|DY621101
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: TAAAAACTTTACCCCAA-TAGAGCAAGAGCTGCAAAGAACTCGGCAGCAG GGCATTTTTATATCCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAEST: gi|74232819|gb|DT640733.1|DT640733
genomic: TAAAA-CTT-ACCC-AACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATC-TAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAA
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|91872807|gb|EB402764.1|EB402764
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|60396273|gb|DN229142.1|DN229142
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|94472378|gb|EB701336.1|EB701336
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|71426016|gb|DR807066.1|DR807066
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|76290001|gb|DV029569.1|DV029569
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAATEST: gi|101385511|gb|EB814802.1|EB814802
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
EST: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG GGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
genomic: GGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactccta ... tctctcacagGGCATTTTTATATCTAGTTCAGTTGATCAGTCACACTCCATGAGTGGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgttactcctatgtcatgtcgcattttacagccctgtgtcctattgactaaattgaagtttgcttaagatattttctctcacag
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT