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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAACATAATAATGTCTACATGCAACAGgtcccttctaatcacctacaaatgtgttttgttatctgaatttctgtaatgctgttcatcttttttttaaaaaaaatatag

Basic information

species Zea mays
transcript GRMZM2G028733_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028733_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 7
ACACTGCGTAAAAAATACCCGCAATTTGCGCAGCAACATAATAATGTCTACATGCAACAGgtcccttctaatcacctacaaatgtgtttt--gttat----ctgaatttctgtaatgctgttcatcttttttttaaaaaaaatatag
|| ||||||||||| || || || |||||||| ||||| |||||||| || |||||||||||   ||    |||||||  | |   ||||  ||| |    |||  | ||||||    |    ||  ||   || || ||| |  ||
ACGCTGCGTAAAAAGTATCCCCAGTTTGCGCAACAACAAAATAATGTTTATATGCAACAGgtttgtttggttcacctatgattaaattttaagtttttctactgtttatctgtatgattaaatattgttcacttgaacaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32942700|gb|CF047519.1|CF047519
EST:     AAAAATACCCGCAATTTGCGCAGCAACATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACACTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCGCAGCAACATAATAATGTCTACATGCAACAGgtcccttcta ... aaaaatatagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACACTTTCTCAAACTCTT