1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTCACAGTGCTGGTCTTTACAATCTTGGGAATACATGCTATATGAATTCCACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAGgtctaacctaaaatttcatatgtattaattttgaagcggcttttgatttggtgtttgatataattcttttctacttgtccag
species | Zea mays |
transcript | GRMZM2G028733_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAG CTATTCAGATACTEST: gi|211181947|gb|FL254910.1|FL254910
genomic: ACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAGgtctaaccta ... acttgtccagCTATTCAGATACT
EST: ACATTGCAATGTTTGCATTCAGTTTCAGAGCTGAAGTCAGCGCTGCTAAS -TATTTCAGATACTGTAAAAGGTAATGGCATTGACCAAGCTTCTCATAATTEST: gi|32942700|gb|CF047519.1|CF047519
genomic: ACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAGgtctaaccta ... acttgtccagCTATT-CAGATACTGTAAAAGGTAATGGCATTGACCAAGCTTCTCATAATT
EST: ATTCAGTTCCAGAGCTGAAGTCAGTGCTGCTAAG CTATTCAGATACTGTAAAAGGTAATGGCATTGACCAAGCTTCTCATAATTTEST: gi|211181948|gb|FL254911.1|FL254911
genomic: ATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAGgtctaaccta ... acttgtccagCTATTCAGATACTGTAAAAGGTAATGGCATTGACCAAGCTTCTCATAATTT
EST: ACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAG CTATTCAGATACTGTAAAAGGTAATGGCATTGACCAAGCTTCTCATAATTT
genomic: ACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAGgtctaaccta ... acttgtccagCTATTCAGATACTGTAAAAGGTAATGGCATTGACCAAGCTTCTCATAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACAGTGCTGGTCTTTACAATCTTGGGAATACATGCTATATGAATTCCACATTGCAATGTTTGCATTCAGTTCCAGAGCTGAAGTCAGCGCTGCTAAGgtctaacctaaaatttcatatgtattaattttgaagcggcttttgatttggtgtttgatataattcttttctacttgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT