Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatggaatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G028733_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatggaatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
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GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGgtatgtttatttctcg-agtaaaaaacatactccctttggtaaaactat-agaacaacacttttaagcaagaactaca---------cttctttacagtaacttttgagaa---------------------------------------------------------------------------------
upper sequence: GRMZM2G028733_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatggaatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
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GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGgtaa---agctcactatctgcttttttgtgtgt---gtttttggatagttattgttgagtcggacaa-attatccttggaagaatttgtttgctttctgaaat----ttatttt-------acaatgtcatcgtgcttggttatctcag-------------------------------------------
upper sequence: GRMZM2G028733_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA08G20900.1 (Glycine max), 5'ss of exon 12
GTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgta----tgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatgg-aatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
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GTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAAAAGGCTAAGATTTTGCGGgtagagctcactgtcttttttgtgtgtgtgtttttggatagttatt-gttgggttggacaaattatccttggaaagttttgtttgctttctaaagtttatttgacaatgtcatcgtgcttggttatctcag------------------------------------------------------------------
upper sequence: GRMZM2G028733_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ12930 (Selaginella moellendorffii), 5'ss of exon 11
GTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatggaatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
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ATACTTGACTGTGCAGTTTGTTCGTTTCTTCTGGAAGCGGGAAACGAAACAGAAAGCAAAGATCTTGAGGgtaagtt--ttggttttaaacatttgcttcaaagaaaatgtccttttaacgt-gcag---------------------------------------------------------------------------------------------------------------------------------------
upper sequence: GRMZM2G028733_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ09332 (Selaginella moellendorffii), 5'ss of exon 11
GTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatggaatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
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----TTGACTGTGCAGTTTGTTCGTTTCTTCTGGAAACGGGAAACGAAACAGAAAGCAAAGATCTTGAGGgtaagtt--ttggttttagacatttgcttcaaaggaaatgcccttttaacgt-gcag---------------------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60354780|gb|DN221753.1|DN221753EST: TCGTTTCTTTTGGAAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGA AAAGTTGATTACCCACTGGAACTGGATGTTTACGAATTTTGCTCTGATGAA
genomic: TCGTTTCTTTTGG-AAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagc ... ttatttccagAAAGTTGATTACCCACTGGAACTGGATGTTTACGAATTTTGCTCTGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTGACTGTGCAGTTCGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCGAAGATTTTACGAgtatgttagcttcttttattccctttcctttgaacaatggtttgatgattatagcaactttctacaacaaagattttatgagtatgtctattttatatggaatcttgttatttttgtctctactatggtgttagacatgtttaccttattggctaaaataattctcttttgtgtttttttatttatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA