1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTAACCTTAAGCGCGGAGGGCAGCGTGTTGCTACAATGCTTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgatattttacaagttaataaactgttatcatatcatatactgtacataccatgccatttgtgtcagcttgtttctgtcccag
species | Zea mays |
transcript | GRMZM2G028004_T05 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|37395929|gb|CF635251.1|CF635251
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|31353632|gb|CD437989.1|CD437989
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|211143817|gb|FL448468.1|FL448468
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTT-C-C-- GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|60357917|gb|DN224890.1|DN224890
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|24768702|gb|CA403831.1|CA403831
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|67013389|gb|CO442138.1|CO442138
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCN- --AG-AGATGGAGAGTGCANCTGTGNGAG-AAACGTGGTCAAAGGATTGTGEST: gi|5901353|gb|AW042453.1|AW042453
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTG-GAGGAAACGTGGTCAAAGGATTGTG
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|67013387|gb|CO442136.1|CO442136
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG G-AG-A--TGGAGAGTGCANCTGTGNGAG-AAACGTGGTCAAAGGATTGTGEST: gi|211143816|gb|FL448467.1|FL448467
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTG-GAGGAAACGTGGTCAAAGGATTGTG
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTT-C-C-- GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|31364601|gb|CD448956.1|CD448956
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|18650084|gb|BM498903.1|BM498903
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|60357918|gb|DN224891.1|DN224891
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|60355576|gb|DN222549.1|DN222549
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGTEST: gi|31363979|gb|CD448334.1|CD448334
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
EST: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAG GCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
genomic: TTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgat ... tctgtcccagGCAGGAGATGGAGAGTGCAGCTGTGGAGGAAACGTGGTCAAAGGATTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAACCTTAAGCGCGGAGGGCAGCGTGTTGCTACAATGCTTATGTATTTGACAGATGGCGTTGTAGGTGGTGAAACTCACTTTCCGCAGgttagctgatattttacaagttaataaactgttatcatatcatatactgtacataccatgccatttgtgtcagcttgtttctgtcccag
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