1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctggtttcacattcatgccttaagttgtataatctccataaatattatgcatgtgtgaggcatagttttctctctcgaacgcacaacgttgtt...
species | Zea mays |
transcript | GRMZM2G028004_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGTGATCCAGAGGCTGTTCTTCTTCGCC-TCTTTAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAATEST: gi|31364418|gb|CD448773.1|CD448773
genomic: TAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
EST: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAATEST: gi|67013389|gb|CO442138.1|CO442138
genomic: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
EST: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAATEST: gi|5901353|gb|AW042453.1|AW042453
genomic: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
EST: GATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAATEST: gi|67013387|gb|CO442136.1|CO442136
genomic: GATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
EST: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAATEST: gi|31364601|gb|CD448956.1|CD448956
genomic: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
EST: GTTCTTCTTCGCCTTGGATAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAATEST: gi|211001688|gb|FL223536.1|FL223536
genomic: GTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
EST: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT GTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
genomic: TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctg ... taatgtgtagGTGAAGCCTGAAGTTATCAGCTGGACGCCAAGGATAATTGTTTTCCATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATATgtaagttctggtttcacattcatgccttaagttgtataatctccataaatattatgcatgtgtgaggcatagttttctctctcgaacgcacaacgttgtt
- - GCAGAT
- - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctctc