1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggtttcttaactccagctagcatttacaaaattgtgtacattttacataatttactaattttattttagttgcattttgcttccttttccctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
species | Zea mays |
transcript | GRMZM2G028004_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAGEST: gi|67013389|gb|CO442138.1|CO442138
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
EST: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAGEST: gi|67013387|gb|CO442136.1|CO442136
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
EST: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAGEST: gi|211001688|gb|FL223536.1|FL223536
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
EST: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTG GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
genomic: GCGGCGCCTGCTGCCTCTGGCCACCTTCGTCACACTCGGCATGATCCTTGgtgagcactg ... ctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
cataatttactaattttattttagttgcattttgcttccttttccctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
tactaat putative branch site (score: 1)
ttgcattttgcttcct putative PPT
tttactaattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttcttaactccagctagcatttacaaaattgtgtacattttacataatttactaattttattttagttgcattttgcttccttttccctgaacatagGATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG
- - - - - ctccagc
- - - - - - - - - - - - tacaaaa
- - - - - - - - - - - - - - - - - - tacattt