1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttgatgaaattaagacagcaattctgtattttttttacttgagtatttttgtgagctaacttcaacaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACT
species | Zea mays |
transcript | GRMZM2G028004_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|31363979|gb|CD448334.1|CD448334
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: AAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAACCTAGTCAGTATTATAGCCCACATCATGATTACTTCTCTGACACEST: gi|18650084|gb|BM498903.1|BM498903
genomic: AAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: AGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|31353632|gb|CD437989.1|CD437989
genomic: AGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|24768702|gb|CA403831.1|CA403831
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|67013387|gb|CO442136.1|CO442136
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|24768774|gb|CA403903.1|CA403903
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|211001688|gb|FL223536.1|FL223536
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTTTCTCTCAA-TACCTAAAGAAAATGGGGAGCTCATTTCA-GTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACCCEST: gi|67013389|gb|CO442138.1|CO442138
genomic: GTT-CTCTCAAATACCTAAAGAAAATGGGGAGCTCATT-CAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|31364601|gb|CD448956.1|CD448956
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|37395929|gb|CF635251.1|CF635251
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAACTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACEST: gi|60355576|gb|DN222549.1|DN222549
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
EST: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
genomic: GTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAGgtacttgatg ... acaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACAC
aattctgtattttttttacttgagtatttttgtgagctaacttcaacaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACT
agctaac putative branch site (score: 2)
tattttttttacttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgatgaaattaagacagcaattctgtattttttttacttgagtatttttgtgagctaacttcaacaatggcagGTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC