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gtgtgttaattttgtctagttaaatatcctgatcagaagatctttattagagtcatctcagttgtgttcttttggcctcggggacttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTCTGAAAGGAGAGAAATGGTCCGCGACGAAATGGATGAGGCAGAAGATGA
species | Zea mays |
transcript | GRMZM2G028004_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCEST: gi|31363979|gb|CD448334.1|CD448334
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCC
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|18650084|gb|BM498903.1|BM498903
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|5607895|gb|AI901562.1|AI901562
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|31353632|gb|CD437989.1|CD437989
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|24768702|gb|CA403831.1|CA403831
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|211143817|gb|FL448468.1|FL448468
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|67013387|gb|CO442136.1|CO442136
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: ATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGNAGCATG G-ATTGGATGGTAACACAGACC-AAACAGTATC-ACAGCGGGTGCEST: gi|24768774|gb|CA403903.1|CA403903
genomic: ATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGG-AGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGC
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|67013389|gb|CO442138.1|CO442138
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGG-ACGCTGTTCTCTTCTGGAGCATG G-ATTGGATGGTA-CACAGACCCAA-CAGTATC-ACAGCGGGTGCCCCTGTEST: gi|211143816|gb|FL448467.1|FL448467
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCC-TGT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|31364601|gb|CD448956.1|CD448956
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|37395929|gb|CF635251.1|CF635251
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|60355576|gb|DN222549.1|DN222549
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
atctttattagagtcatctcagttgtgttcttttggcctcggggacttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTCTGAAAGGAGAGAAATGGTCCGCGACGAAATGGATGAGGCAGAAGATGA
cttgttcc CT-rich tract
tattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttaattttgtctagttaaatatcctgatcagaagatctttattagagtcatctcagttgtgttcttttggcctcggggacttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTCTGAAAGGAGAGAAATGGTCCGCGACGAAATGGATGAGGCAGAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG