1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atatttattctttgtagatatgagtatctaaaaatctaggctagtcatgcatttcttgtgctttctgtattcatgatgtcactggtcccatgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAG
species | Zea mays |
transcript | GRMZM2G028004_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|31353632|gb|CD437989.1|CD437989
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|31364418|gb|CD448773.1|CD448773
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTCCTGGTATGTTGGTGAATTCTGAAEST: gi|24768702|gb|CA403831.1|CA403831
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: TGTAGTGGATG-TGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|67013387|gb|CO442136.1|CO442136
genomic: TGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|24768774|gb|CA403903.1|CA403903
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|211001688|gb|FL223536.1|FL223536
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|67013389|gb|CO442138.1|CO442138
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|31364601|gb|CD448956.1|CD448956
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|37395929|gb|CF635251.1|CF635251
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAEST: gi|60355576|gb|DN222549.1|DN222549
genomic: CTAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
EST: TAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAG GGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
genomic: TAGACCAAGACTCCAAATATCCACTGTAGTGGATGTTGCAACAGGAAAGgtatgttggt ... tgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAA
catgcatttcttgtgctttctgtattcatgatgtcactggtcccatgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAG
tgttctct CT-rich tract
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttattctttgtagatatgagtatctaaaaatctaggctagtcatgcatttcttgtgctttctgtattcatgatgtcactggtcccatgttctctagGGTGTAAAAAGTGATGTTCGGACGAGTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA