1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atttggatatctaatttgtatcacaaagctagatccatgtcctaaacactgcatttatagaagattattgttctgtgaacacttgtttccccttgtgtagGCTATAGAGAAGCGAATATCTGTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG
species | Zea mays |
transcript | GRMZM2G028004_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCCTGGTATGTTGGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAG GCTATACAGAAGCGAATEST: gi|74239471|gb|DT647385.1|DT647385
genomic: GTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAGgtcattttta ... ccttgtgtagGCTATAGAGAAGCGAAT
EST: GTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAG GCTATAGAGAAGCGAATATCTGTGTTCTCTCAAATACCTAAAGAAAATGGGEST: gi|211001688|gb|FL223536.1|FL223536
genomic: GTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAGgtcattttta ... ccttgtgtagGCTATAGAGAAGCGAATATCTGTGTTCTCTCAAATACCTAAAGAAAATGGG
EST: GTTCTGGTATGTTTGTGAATTCTGAAGAA-GAAAATCTCCAGTCGTTCAG GCTATAGAGAAGCGAATATCTGTGTTTCTCTCAA-TACCTAAAGAAAATGG
genomic: GTTCTGGTATGTTTGTGAATTCTGAAGAAAGAAAATCTCCAGTCGTTCAGgtcattttta ... ccttgtgtagGCTATAGAGAAGCGAATATCTGTGTT-CTCTCAAATACCTAAAGAAAATGG
acactgcatttatagaagattattgttctgtgaacacttgtttccccttgtgtagGCTATAGAGAAGCGAATATCTGTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG
cacttgtttcccctt CT-rich tract
atttatagaagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttggatatctaatttgtatcacaaagctagatccatgtcctaaacactgcatttatagaagattattgttctgtgaacacttgtttccccttgtgtagGCTATAGAGAAGCGAATATCTGTGTTCTCTCAAATACCTAAAGAAAATGGGGAGCTCATTCAAGTATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA